If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ), 'gf_id' => 'HOM05D000827', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000827' ), 'data_identifier' => 'HOM05D000827', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000827', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13720' => 'bna', 'A03p41000' => 'bna', 'A03p53490' => 'bna', 'A03p62820' => 'bna', 'A05p25580' => 'bna', 'A05p30540' => 'bna', 'A05p43720' => 'bna', 'A08p15670' => 'bna', 'A08p16970' => 'bna', 'A09p34620' => 'bna', 'Aa31LG10G4470' => 'aar', 'Aa31LG5G14100' => 'aar', 'Aa31LG6G4460' => 'aar', 'Aa31LG8G12940' => 'aar', 'Aa31LG9G15740' => 'aar', 'Aa31sc72G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2778' => 'aag', 'Actinidia00107' => 'ach', 'Actinidia04377' => 'ach', 'Actinidia05051' => 'ach', 'Actinidia05504' => 'ach', 'Actinidia05830' => 'ach', 'Actinidia10760' => 'ach', 'Actinidia11887' => 'ach', 'Actinidia12228' => 'ach', 'Actinidia17847' => 'ach', 'Actinidia27981' => 'ach', 'Actinidia30858' => 'ach', 'Actinidia31732' => 'ach', 'Actinidia34382' => 'ach', 'Actinidia39271' => 'ach', 'Ah.03g146290' => 'amhyb', 'Ah.06g181580' => 'amhyb', 'AL1G45830' => 'aly', 'AL1G56870' => 'aly', 'AL3G13360' => 'aly', 'AL3G32450' => 'aly', 'AL3G46700' => 'aly', 'AL4G31640' => 'aly', 'AL5G28050' => 'aly', 'AL7G16980' => 'aly', 'AL7G31250' => 'aly', 'Aqoxy1G04064' => 'aox', 'Aqoxy3G00466' => 'aox', 'Aqoxy3G00467' => 'aox', 'Aqoxy6G00892' => 'aox', 'Aqoxy6G02793' => 'aox', 'arahy.Tifrunner.gnm1.ann1.046HV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HJ3TW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2I1ZFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BPU9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVNS8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJPM8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC5DAD' => 'arhy', 'AT1G31760' => 'ath', 'AT1G49520' => 'ath', 'AT2G14880' => 'ath', 'AT2G35605' => 'ath', 'AT3G03590' => 'ath', 'AT3G19080' => 'ath', 'AT3G48600' => 'ath', 'AT4G22360' => 'ath', 'AT4G34290' => 'ath', 'ATR0568G208' => 'atr', 'ATR0618G387' => 'atr', 'ATR0661G022' => 'atr', 'ATR0712G136' => 'atr', 'ATR0767G010' => 'atr', 'Atru.chr1.2445' => 'acertr', 'Atru.chr2.1633' => 'acertr', 'Atru.chr2.3583' => 'acertr', 'Atru.chr3.426' => 'acertr', 'Atru.chr5.2422' => 'acertr', 'Atru.chr5.2817' => 'acertr', 'Atru.chr8.2652' => 'acertr', 'AUR62001965' => 'cqu', 'AUR62003841' => 'cqu', 'AUR62003961' => 'cqu', 'AUR62011425' => 'cqu', 'AUR62015622' => 'cqu', 'AUR62015922' => 'cqu', 'AUR62016635' => 'cqu', 'AUR62024751' => 'cqu', 'AUR62038273' => 'cqu', 'BcaB01g00014' => 'bca', 'BcaB03g11728' => 'bca', 'BcaB03g13793' => 'bca', 'BcaB06g25962' => 'bca', 'BcaB07g32822' => 'bca', 'BcaC01g00773' => 'bca', 'BcaC01g00917' => 'bca', 'BcaC05g27189' => 'bca', 'BcaC05g27961' => 'bca', 'BcaC05g28535' => 'bca', 'BcaC05g29864' => 'bca', 'BcaC05g30265' => 'bca', 'BcaC06g30919' => 'bca', 'BcaC09g51099' => 'bca', 'BcaNung02498' => 'bca', 'BolC1t00434H' => 'bol', 'BolC1t01610H' => 'bol', 'BolC3t17299H' => 'bol', 'BolC3t20691H' => 'bol', 'BolC3t20882H' => 'bol', 'BolC5t31819H' => 'bol', 'BolC5t32712H' => 'bol', 'BolC5t33344H' => 'bol', 'BolC5t34993H' => 'bol', 'BolC7t45684H' => 'bol', 'BolC7t46483H' => 'bol', 'BraA01t00400Z' => 'bra', 'BraA01t01317Z' => 'bra', 'BraA03t13258Z' => 'bra', 'BraA03t14415Z' => 'bra', 'BraA03t15358Z' => 'bra', 'BraA05t21440Z' => 'bra', 'BraA05t21892Z' => 'bra', 'BraA05t23111Z' => 'bra', 'BraA08t33547Z' => 'bra', 'BraA08t33660Z' => 'bra', 'BraA09t38998Z' => 'bra', 'C01p04480' => 'bna', 'C01p16630' => 'bna', 'C03p50060' => 'bna', 'C03p84120' => 'bna', 'C03p85910' => 'bna', 'C05p30890' => 'bna', 'C05p39690' => 'bna', 'C05p46160' => 'bna', 'C05p63300' => 'bna', 'C07p51820' => 'bna', 'C07p60510' => 'bna', 'CAN.G1186.42' => 'can', 'CAN.G179.44' => 'can', 'CAN.G322.36' => 'can', 'CAN.G470.12' => 'can', 'CAN.G606.32' => 'can', 'CAN.G930.2' => 'can', 'CANSAT01G2960' => 'cansat', 'CANSAT21G1963' => 'cansat', 'CANSAT25G0462' => 'cansat', 'CANSAT25G2754' => 'cansat', 'CANSAT56G2789' => 'cansat', 'CANSAT56G2793' => 'cansat', 'CANSAT80G2464' => 'cansat', 'CARHR031060' => 'chi', 'CARHR039550' => 'chi', 'CARHR077600' => 'chi', 'CARHR094500' => 'chi', 'CARHR129790' => 'chi', 'CARHR229270' => 'chi', 'CARHR242480' => 'chi', 'Carub.0001s3006' => 'cru', 'Carub.0001s3871' => 'cru', 'Carub.0003s0275' => 'cru', 'Carub.0003s1892' => 'cru', 'Carub.0003s2888' => 'cru', 'Carub.0004s1729' => 'cru', 'Carub.0007s0607' => 'cru', 'Carub.0007s1894' => 'cru', 'Ca_14775_v3' => 'car', 'Ca_24348_v3' => 'car', 'Ca_24794_v3' => 'car', 'Ca_25044_v3' => 'car', 'CBR_g26336' => 'cbr', 'Cc02_g18450' => 'ccan', 'Cc02_g19550' => 'ccan', 'Cc02_g26480' => 'ccan', 'Cc05_g14490' => 'ccan', 'Cc06_g21520' => 'ccan', 'Cc07_g05720' => 'ccan', 'Cc08_g05790' => 'ccan', 'CDE02G1634' => 'cde', 'CDE04G0498' => 'cde', 'CDE04G0823' => 'cde', 'CDE04G1362' => 'cde', 'CDE06G0687' => 'cde', 'CDE06G1156' => 'cde', 'CDE07G2045' => 'cde', 'CDE09G0627' => 'cde', 'Cfa000097' => 'cfa', 'Cfa003700' => 'cfa', 'Cfa003974' => 'cfa', 'Cfa004619' => 'cfa', 'Cfa012293' => 'cfa', 'Cfa020258' => 'cfa', 'Ciclev10013159m.g' => 'ccl', 'Ciclev10015752m.g' => 'ccl', 'Ciclev10026010m.g' => 'ccl', 'Ciclev10028659m.g' => 'ccl', 'Ciclev10029545m.g' => 'ccl', 'Ciclev10033040m.g' => 'ccl', 'CiPaw.01G023400' => 'cil', 'CiPaw.02G010400' => 'cil', 'CiPaw.05G014400' => 'cil', 'CiPaw.06G167600' => 'cil', 'CiPaw.09G102600' => 'cil', 'CiPaw.10G078100' => 'cil', 'CiPaw.11G075000' => 'cil', 'CiPaw.11G196600' => 'cil', 'CiPaw.12G054400' => 'cil', 'ClCG02G006640' => 'cla', 'ClCG02G013290' => 'cla', 'ClCG05G002470' => 'cla', 'ClCG06G000610' => 'cla', 'ClCG09G020920' => 'cla', 'COL.COLO4_11280' => 'col', 'COL.COLO4_11352' => 'col', 'COL.COLO4_11723' => 'col', 'COL.COLO4_21418' => 'col', 'COL.COLO4_21419' => 'col', 'COL.COLO4_31888' => 'col', 'COL.COLO4_32550' => 'col', 'Cpa.g.c42255' => 'cpa', 'Cpa.g.sc200.3' => 'cpa', 'Cpa.g.sc62.52' => 'cpa', 'Cpa.g.sc73.28' => 'cpa', 'Cpa.g.sc75.114' => 'cpa', 'Cre02.g118250' => 'cre', 'CsaV3_2G017470' => 'csa', 'CsaV3_3G009900' => 'csa', 'CsaV3_6G006380' => 'csa', 'CsaV3_7G007990' => 'csa', 'CsaV3_7G018820' => 'csa', 'CSS0009817' => 'camsi', 'CSS0013162' => 'camsi', 'CSS0014939' => 'camsi', 'CSS0017282' => 'camsi', 'CSS0024154' => 'camsi', 'CSS0028661' => 'camsi', 'CSS0031279' => 'camsi', 'CSS0035225' => 'camsi', 'CSS0035652' => 'camsi', 'CSS0043160' => 'camsi', 'CSS0043352' => 'camsi', 'CSS0043851' => 'camsi', 'CSS0045636' => 'camsi', 'CSS0046507' => 'camsi', 'CSS0048380' => 'camsi', 'DCAR_001667' => 'dca', 'DCAR_004528' => 'dca', 'DCAR_010925' => 'dca', 'DCAR_013509' => 'dca', 'DCAR_016641' => 'dca', 'DCAR_021969' => 'dca', 'DCAR_022598' => 'dca', 'Dinv07406' => 'din', 'Dinv13968' => 'din', 'Dinv15782' => 'din', 'Dinv29954' => 'din', 'Dinv30830' => 'din', 'Dinv37426' => 'din', 'Dinv39894' => 'din', 'Dinv40819' => 'din', 'Dinv42213' => 'din', 'Dinv43520' => 'din', 'Dinv43960' => 'din', 'Duzib052G0022' => 'dzi', 'Duzib132G0316' => 'dzi', 'Duzib132G0744' => 'dzi', 'Duzib147G1103' => 'dzi', 'Duzib160G0265' => 'dzi', 'Duzib177G0213' => 'dzi', 'Duzib177G0432' => 'dzi', 'Duzib192G1053' => 'dzi', 'Duzib205G1900' => 'dzi', 'Duzib235G0579' => 'dzi', 'Duzib264G0886' => 'dzi', 'ECA232G2430' => 'eca', 'ECA233G5913' => 'eca', 'ECA234G2777' => 'eca', 'ECA248G2256' => 'eca', 'ECA248G3303' => 'eca', 'EL10Ac4g07640' => 'bvu', 'EL10Ac4g08090' => 'bvu', 'EL10Ac6g15667' => 'bvu', 'EL10Ac9g21819' => 'bvu', 'Eucgr.D01092' => 'egr', 'Eucgr.F00636' => 'egr', 'Eucgr.G01289' => 'egr', 'Eucgr.I01179' => 'egr', 'Eucgr.L03369' => 'egr', 'FAN01G3073' => 'fan', 'FAN03G1816' => 'fan', 'FAN06G2126' => 'fan', 'FAN10G1218' => 'fan', 'FAN11G1151' => 'fan', 'FAN15G0914' => 'fan', 'FAN15G1827' => 'fan', 'FAN16G2407' => 'fan', 'FAN20G0485' => 'fan', 'FAN20G2663' => 'fan', 'FAN21G1683' => 'fan', 'FAN21G2074' => 'fan', 'FAN24G0901' => 'fan', 'FAN24G1876' => 'fan', 'FAN25G2911' => 'fan', 'FAN27G0395' => 'fan', 'FAN27G2733' => 'fan', 'FvH4_2g04600' => 'fve', 'FvH4_2g06890' => 'fve', 'FvH4_3g00950' => 'fve', 'FvH4_3g30330' => 'fve', 'FvH4_7g08300' => 'fve', 'Glyma.01G154200' => 'gma', 'Glyma.01G183600' => 'gma', 'Glyma.01G243300' => 'gma', 'Glyma.07G265400' => 'gma', 'Glyma.08G324000' => 'gma', 'Glyma.11G001000' => 'gma', 'Glyma.11G058700' => 'gma', 'Glyma.11G090400' => 'gma', 'Glyma.17G008600' => 'gma', 'Gohir.A03G184500' => 'ghi', 'Gohir.A03G191000' => 'ghi', 'Gohir.A06G205100' => 'ghi', 'Gohir.A08G149400' => 'ghi', 'Gohir.A10G009300' => 'ghi', 'Gohir.A11G189600' => 'ghi', 'Gohir.A12G020600' => 'ghi', 'Gohir.D02G206000' => 'ghi', 'Gohir.D02G212000' => 'ghi', 'Gohir.D06G216400' => 'ghi', 'Gohir.D08G170400' => 'ghi', 'Gohir.D08G238400' => 'ghi', 'Gohir.D10G009000' => 'ghi', 'Gohir.D11G196350' => 'ghi', 'Gohir.D11G196425' => 'ghi', 'Gohir.D11G237200' => 'ghi', 'Gohir.D12G020900' => 'ghi', 'Gorai.004G177900' => 'gra', 'Gorai.004G253900' => 'gra', 'Gorai.005G233400' => 'gra', 'Gorai.005G239900' => 'gra', 'Gorai.007G210300' => 'gra', 'Gorai.007G250300' => 'gra', 'Gorai.008G021200' => 'gra', 'Gorai.010G249800' => 'gra', 'Gorai.011G009800' => 'gra', 'GSVIVG01003333001' => 'vvi', 'GSVIVG01003340001' => 'vvi', 'GSVIVG01003552001' => 'vvi', 'GSVIVG01019325001' => 'vvi', 'GSVIVG01031805001' => 'vvi', 'GSVIVG01036871001' => 'vvi', 'GSVIVG01037751001' => 'vvi', 'GSVIVG01037881001' => 'vvi', 'HanXRQChr01g0006761' => 'han', 'HanXRQChr01g0018471' => 'han', 'HanXRQChr01g0025031' => 'han', 'HanXRQChr10g0303211' => 'han', 'HanXRQChr12g0378341' => 'han', 'HanXRQChr15g0473831' => 'han', 'HanXRQChr16g0509121' => 'han', 'HanXRQChr16g0516611' => 'han', 'Haze_06928' => 'cav', 'Haze_06935' => 'cav', 'Haze_08436' => 'cav', 'Haze_09762' => 'cav', 'Haze_15446' => 'cav', 'Haze_15786' => 'cav', 'Hma1.2p1_0036F.1_g022970' => 'hma', 'Hma1.2p1_0657F.1_g197130' => 'hma', 'Hma1.2p1_0680F.1_g202390' => 'hma', 'Hma1.2p1_0873F.1_g231240' => 'hma', 'Hma1.2p1_1023F.1_g248950' => 'hma', 'Hma1.2p1_1174F.1_g263910' => 'hma', 'Hma1.2p1_1199F.1_g266370' => 'hma', 'Hma1.2p1_3028F.1_g331850' => 'hma', 'HPP92_015775' => 'vpl', 'HPP92_017844' => 'vpl', 'HPP92_018724' => 'vpl', 'Hund01936' => 'sun', 'Hund06188' => 'sun', 'Hund13580' => 'sun', 'Hund16377' => 'sun', 'Hund23157' => 'sun', 'Hund23170' => 'sun', 'Lalb_Chr05g0210761' => 'lal', 'Lalb_Chr05g0213161' => 'lal', 'Lalb_Chr05g0215071' => 'lal', 'Lalb_Chr16g0380361' => 'lal', 'Lalb_Chr20g0116171' => 'lal', 'Lj1A883T37' => 'lonja', 'Lj1C1240G4' => 'lonja', 'Lj1g0012448' => 'lja', 'Lj2g0019864' => 'lja', 'Lj2g0023362' => 'lja', 'Lj4C138G6' => 'lonja', 'Lj4g0007136' => 'lja', 'Lj5A217G84' => 'lonja', 'Lj6g0021250' => 'lja', 'Lsat_1_v5_gn_0_26921' => 'lsa', 'Lsat_1_v5_gn_1_89320' => 'lsa', 'Lsat_1_v5_gn_3_92820' => 'lsa', 'Lsat_1_v5_gn_4_62081' => 'lsa', 'Lsat_1_v5_gn_5_113480' => 'lsa', 'Lsat_1_v5_gn_6_17261' => 'lsa', 'Lsat_1_v5_gn_7_86080' => 'lsa', 'Manes.08G070900' => 'mes', 'Manes.08G156400' => 'mes', 'Manes.09G076605' => 'mes', 'Manes.09G133600' => 'mes', 'Manes.10G072600' => 'mes', 'Manes.10G072700' => 'mes', 'Manes.15G143600' => 'mes', 'Manes.17G094566' => 'mes', 'Mapoly0001s0263' => 'mpo', 'Mapoly0013s0162' => 'mpo', 'MBI16_g19912_MAGBIO' => 'mbi', 'MCO04G043' => 'mco', 'MD02G1231800' => 'mdo', 'MD03G1190700' => 'mdo', 'MD05G1358100' => 'mdo', 'MD07G1081700' => 'mdo', 'MD10G1089200' => 'mdo', 'MD10G1332000' => 'mdo', 'MD11G1207400' => 'mdo', 'MD13G1205100' => 'mdo', 'Medtr3g055330' => 'mtr', 'Medtr5g005200' => 'mtr', 'Medtr5g018010' => 'mtr', 'Medtr5g025500' => 'mtr', 'MELO3C006211.2' => 'cme', 'MELO3C013104.2' => 'cme', 'MELO3C018505.2' => 'cme', 'MELO3C020943.2' => 'cme', 'MELO3C022482.2' => 'cme', 'Migut.A00713' => 'egut', 'Migut.B00307' => 'egut', 'Migut.B00414' => 'egut', 'Migut.B01419' => 'egut', 'Migut.E01374' => 'egut', 'Migut.H00467' => 'egut', 'Migut.H01782' => 'egut', 'Migut.I00273' => 'egut', 'Migut.M01398' => 'egut', 'Migut.M01695' => 'egut', 'MSTRG.13005' => 'ama', 'MSTRG.14465' => 'ama', 'MSTRG.16697' => 'ama', 'MSTRG.17081' => 'ama', 'MSTRG.20202' => 'ama', 'MSTRG.20628' => 'ama', 'MSTRG.23778' => 'ama', 'MSTRG.6970' => 'ama', 'MSTRG.7167' => 'ama', 'Nitab4.5_0000030g0470' => 'nta', 'Nitab4.5_0000143g0210' => 'nta', 'Nitab4.5_0000792g0150' => 'nta', 'Nitab4.5_0000806g0120' => 'nta', 'Nitab4.5_0001160g0110' => 'nta', 'Nitab4.5_0001175g0150' => 'nta', 'Nitab4.5_0001480g0030' => 'nta', 'Nitab4.5_0002017g0070' => 'nta', 'Nitab4.5_0002244g0100' => 'nta', 'Nitab4.5_0002462g0060' => 'nta', 'Nitab4.5_0003704g0020' => 'nta', 'Nitab4.5_0003726g0090' => 'nta', 'Nitab4.5_0004362g0050' => 'nta', 'Nitab4.5_0004396g0010' => 'nta', 'Nitab4.5_0004685g0010' => 'nta', 'Nitab4.5_0006785g0040' => 'nta', 'Nitab4.5_0009094g0020' => 'nta', 'Nitab4.5_0012578g0020' => 'nta', 'Nitab4.5_0015422g0010' => 'nta', 'Nitab4.5_0016158g0010' => 'nta', 'Nn1g04640' => 'nnu', 'Nn1g07395' => 'nnu', 'Nn1g09343' => 'nnu', 'Nn2g13593' => 'nnu', 'Nn5g29347' => 'nnu', 'Nn5g30486' => 'nnu', 'Nn6g32082' => 'nnu', 'Oeu003944.1' => 'oeu', 'Oeu005502.1' => 'oeu', 'Oeu005978.1' => 'oeu', 'Oeu007168.3' => 'oeu', 'Oeu009392.1' => 'oeu', 'Oeu010412.1' => 'oeu', 'Oeu013673.1' => 'oeu', 'Oeu016085.1' => 'oeu', 'Oeu016819.1' => 'oeu', 'Oeu020239.1' => 'oeu', 'Os02g0130000' => 'osa', 'Os03g0761000' => 'osa', 'Os03g0764450' => 'osa', 'Os04g0665500' => 'osa', 'Os08g0502800' => 'osa', 'Os12g0507500' => 'osa', 'Peaxi162Scf00016g02621' => 'pax', 'Peaxi162Scf00016g10154' => 'pax', 'Peaxi162Scf00045g00722' => 'pax', 'Peaxi162Scf00049g01112' => 'pax', 'Peaxi162Scf00193g00721' => 'pax', 'Peaxi162Scf00235g00814' => 'pax', 'Peaxi162Scf00352g00212' => 'pax', 'Peaxi162Scf00589g00112' => 'pax', 'Peaxi162Scf00589g00217' => 'pax', 'Peaxi162Scf00907g00019' => 'pax', 'PGR031G0456' => 'pgr', 'PGR042G0057' => 'pgr', 'PGR042G0825' => 'pgr', 'PGR042G2655' => 'pgr', 'PGR042G3744' => 'pgr', 'PGR083G0924' => 'pgr', 'PGR142G2446' => 'pgr', 'PGSC0003DMG400000750' => 'stu', 'PGSC0003DMG400001965' => 'stu', 'PGSC0003DMG400009782' => 'stu', 'PGSC0003DMG400013280' => 'stu', 'PGSC0003DMG400018478' => 'stu', 'PGSC0003DMG400023191' => 'stu', 'PGSC0003DMG400025800' => 'stu', 'PGSC0003DMG400025852' => 'stu', 'Phvul.002G021500' => 'pvu', 'Phvul.002G052700' => 'pvu', 'Phvul.002G121400' => 'pvu', 'Phvul.003G083900' => 'pvu', 'Phvul.006G049900' => 'pvu', 'Potri.001G297400' => 'ptr', 'Potri.004G145200' => 'ptr', 'Potri.005G134500' => 'ptr', 'Potri.006G010700' => 'ptr', 'Potri.007G039350' => 'ptr', 'Potri.009G092200' => 'ptr', 'Potri.009G106700' => 'ptr', 'Potri.013G070600' => 'ptr', 'Potri.016G013400' => 'ptr', 'Pp3c15_14880' => 'ppa', 'Pp3c15_3710' => 'ppa', 'Pp3c17_3610' => 'ppa', 'Pp3c9_18800' => 'ppa', 'PRCOL_00001469' => 'pco', 'Prupe.2G106900' => 'ppe', 'Prupe.4G010100' => 'ppe', 'Prupe.4G228000' => 'ppe', 'Prupe.8G116100' => 'ppe', 'Prupe.8G139100' => 'ppe', 'Psat2g145520' => 'psa', 'Psat2g164800' => 'psa', 'Psat4g228120' => 'psa', 'Psat5g172520' => 'psa', 'PSO017G6582' => 'pso', 'PSO063G1923' => 'pso', 'PSO541G1265' => 'pso', 'PSO541G1858' => 'pso', 'PSO541G3395' => 'pso', 'PSO675G0901' => 'pso', 'PSO675G1846' => 'pso', 'PSO675G7513' => 'pso', 'QL04p053399' => 'qlo', 'QL05p069625' => 'qlo', 'QL06p042760' => 'qlo', 'QL08p008344' => 'qlo', 'QL11p032161' => 'qlo', 'QL11p038399' => 'qlo', 'QL12p004187' => 'qlo', 'RcHm_v2.0_Chr1g0340731' => 'rch', 'RcHm_v2.0_Chr5g0001471' => 'rch', 'RcHm_v2.0_Chr5g0056201' => 'rch', 'RcHm_v2.0_Chr6g0254211' => 'rch', 'RcHm_v2.0_Chr6g0259201' => 'rch', 'Rhsim02G0099300' => 'rsi', 'Rhsim04G0015800' => 'rsi', 'Rhsim05G0080300' => 'rsi', 'Rhsim06G0225300' => 'rsi', 'Rhsim07G0047800' => 'rsi', 'Rhsim08G0104200' => 'rsi', 'Rhsim11G0036900' => 'rsi', 'Rhsim12G0062400' => 'rsi', 'Rhsim12G0062500' => 'rsi', 'Rhsim12G0062600' => 'rsi', 'Rhsim12G0062700' => 'rsi', 'Sabra04G0096200' => 'sbr', 'Sabra06G0008800' => 'sbr', 'Sabra09G0070900' => 'sbr', 'Sabra09G0081500' => 'sbr', 'Sabra13G0061500' => 'sbr', 'Sabra16G0002000' => 'sbr', 'Sabra16G0016000' => 'sbr', 'Sabra16G0186400' => 'sbr', 'SalBow5G5239' => 'sbo', 'SalBow6G5645' => 'sbo', 'SalBow8G2601' => 'sbo', 'Sc03g0008170' => 'sci', 'Sc05g0009600' => 'sci', 'Sc14g0001700' => 'sci', 'Sc16g0001590' => 'sci', 'Sc16g0004950' => 'sci', 'Sc22g0002230' => 'sci', 'Sed0001641' => 'sed', 'Sed0004279' => 'sed', 'Sed0008232' => 'sed', 'Sed0011366' => 'sed', 'Sed0016100' => 'sed', 'Sed0021146' => 'sed', 'Sed0023407' => 'sed', 'Sed0026310' => 'sed', 'SEGI_08679' => 'sgi', 'SEGI_12164' => 'sgi', 'SEGI_40966' => 'sgi', 'SGA_v2.0_scaffold13G06620' => 'sas', 'SGA_v2.0_scaffold15G07245' => 'sas', 'SGA_v2.0_scaffold4G01873' => 'sas', 'SGA_v2.0_scaffold58G20605' => 'sas', 'SGA_v2.0_scaffold8G04384' => 'sas', 'SGA_v2.0_scaffold98G29374' => 'sas', 'SHI00864' => 'shi', 'SHI05501' => 'shi', 'SHI29093' => 'shi', 'SHI37808' => 'shi', 'SHI37809' => 'shi', 'SHI40001' => 'shi', 'SHI43101' => 'shi', 'SHI44156' => 'shi', 'SHI46733' => 'shi', 'SHI53216' => 'shi', 'SMO164G0079' => 'smo', 'SMO169G0215' => 'smo', 'SMO201G0201' => 'smo', 'SMO270G0015' => 'smo', 'SMO306G0028' => 'smo', 'Solyc01g107330.4' => 'sly', 'Solyc01g108290.3' => 'sly', 'Solyc02g065160.2' => 'sly', 'Solyc08g005590.4' => 'sly', 'Solyc08g075400.3' => 'sly', 'Solyc11g012290.2' => 'sly', 'Sopen01g049570' => 'spe', 'Sopen01g050510' => 'spe', 'Sopen02g015290' => 'spe', 'Sopen08g001620' => 'spe', 'Sopen08g024030' => 'spe', 'Sopen10g020980' => 'spe', 'Sopen11g007070' => 'spe', 'Sp1g27440' => 'spa', 'Sp1g36380' => 'spa', 'Sp3g02570' => 'spa', 'Sp3g17160' => 'spa', 'Sp3g28300' => 'spa', 'Sp7g20490' => 'spa', 'TAR374G0942' => 'tar', 'TAR376G0084' => 'tar', 'TAR376G0708' => 'tar', 'TAR381G1509' => 'tar', 'TAR626G0283' => 'tar', 'TAR627G0441' => 'tar', 'TAR627G1209' => 'tar', 'TAR628G1002' => 'tar', 'TAR628G1648' => 'tar', 'TAR629G0081' => 'tar', 'TAR629G3131' => 'tar', 'TAR636G2815' => 'tar', 'THA.LOC104806331' => 'tha', 'THA.LOC104807230' => 'tha', 'THA.LOC104811358' => 'tha', 'THA.LOC104812994' => 'tha', 'THA.LOC104813595' => 'tha', 'THA.LOC104814391' => 'tha', 'THA.LOC104819539' => 'tha', 'THA.LOC104820816' => 'tha', 'Thecc.01G050600' => 'tca', 'Thecc.02G095500' => 'tca', 'Thecc.02G112800' => 'tca', 'Thecc.03G319100' => 'tca', 'Thecc.05G234600' => 'tca', 'Thecc.05G235000' => 'tca', 'Thecc.06G233700' => 'tca', 'Thhalv10008891m.g' => 'esa', 'Thhalv10011568m.g' => 'esa', 'Thhalv10017454m.g' => 'esa', 'Thhalv10020944m.g' => 'esa', 'Thhalv10021710m.g' => 'esa', 'Thhalv10022904m.g' => 'esa', 'Thhalv10025487m.g' => 'esa', 'Thhalv10026522m.g' => 'esa', 'TPR.G11363' => 'tpr', 'TPR.G18338' => 'tpr', 'TPR.G23595' => 'tpr', 'TPR.G8307' => 'tpr', 'TPR.G8987' => 'tpr', 'TWI09G1604' => 'twi', 'TWI31G1098' => 'twi', 'TWI32G0689' => 'twi', 'TWI34G0874' => 'twi', 'TWI38G1318' => 'twi', 'TWI63G0892' => 'twi', 'TWI73G0704' => 'twi', 'TWI79G0611' => 'twi', 'unitig_0.g1359' => 'ugi', 'unitig_26.g8845' => 'ugi', 'unitig_736.g22655' => 'ugi', 'unitig_744.g24220' => 'ugi', 'unitig_85.g27338' => 'ugi', 'vmacro00092' => 'vma', 'vmacro09679' => 'vma', 'vmacro11574' => 'vma', 'vmacro13599' => 'vma', 'vmacro15761' => 'vma', 'vmacro17920' => 'vma', 'vmacro19463' => 'vma', 'vmacro19480' => 'vma', 'VMungo0540G1308' => 'vmu', 'VMungo1215G2818' => 'vmu', 'VMungo1215G2936' => 'vmu', 'VMungo1215G3320' => 'vmu', 'VMungo1215G3336' => 'vmu', 'Zm00001eb046320' => 'zma', 'Zm00001eb058450' => 'zma', 'Zm00001eb067200' => 'zma', 'Zm00001eb199700' => 'zma', 'Zm00001eb208960' => 'zma', 'Zm00001eb214210' => 'zma', 'Zm00001eb214330' => 'zma', 'Zm00001eb220440' => 'zma', 'Zm00001eb220450' => 'zma', 'Zm00001eb231120' => 'zma', 'Zm00001eb264760' => 'zma', 'Zm00001eb433030' => 'zma' ) $gf_id = 'HOM05D000827' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000827' ) $data_identifier = 'HOM05D000827' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 7, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 10, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 10, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433030' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1